Caper package r
WebPackage ‘caper’ October 12, 2024 Type Package Title Comparative Analyses of Phylogenetics and Evolution in R Version 1.0.1 Date 2024-04-16 Author David Orme, Rob Freckleton, Gavin Thomas, Thomas Petzoldt, Su- WebApr 16, 2024 · R Development Page Contributed R Packages . Below is a list of all packages provided by project caper - Comparative Analysis package.. Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, …
Caper package r
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WebFeb 12, 2024 · The 'caper' package requires your phylogeny and data to be in a special kind of R object called a comparative data object. This will match the species names in the tree to those in your data automatically so there is no need to worry about data being ordered correctly (as in some of the other packages in R).
WebJun 3, 2015 · You also need the 'read.tree ()' function from the package ape to read phylogenetic trees into R ( http://cran.r-project.org/web/packages/ape/index.html) The function 'pgls ()' from the... WebMar 18, 2015 · To check that the regression diagnostics are okay in univariate trait regressions against body mass, I used plot.pgls (). The plots showed the presence of some outliers. In some papers that used pgls in Caper, data points with studentized residuals >3 have been excluded as outliers.
Webusing functions from the ape and nlme packages. There are several other ways to conduct PGLS analyses in R, most notably using the pgls function in the caper package. We … WebREADME README for the caper package The caper package provides a set of tools for phylogenetic comparative analyses, primary implementations of phylogenetic …
WebFeb 6, 2024 · and evolution in R David Orme April 16, 2024 This vignette documents the use of the caper package for R (R Development Core Team, 2011) in carrying out a range of comparative analysis methods for phylogenetic data. The caper package, and the code in this vignette, requires the ape package (Paradis et al., 2004) along with the packages …
Webrmhdanville.org lysine and tinnitusWebApr 17, 2024 · caper: Comparative Analyses of Phylogenetics and Evolution in R Functions for performing phylogenetic comparative analyses. Getting started Package overview … kis path boyWebMay 2, 2024 · caper index Package overview R Package Documentation rdrr.io home R language documentation Run R code online Browse R Packages CRAN packages Bioconductor packages R-Forge packages GitHub packages We want your feedback! Note that we can't provide technical support on individual packages. You should contact … kisper coffee tableWebR: Comparative Analyses of Phylogenetics and Evolution in R Comparative Analyses of Phylogenetics and Evolution in R Documentation for package ‘caper’ version 1.0.1 DESCRIPTION file. User guides, package vignettes and other documentation. Help Pages ABCEFGIKLMNPRSTVmisc caper-package Comparative analysis of phylogenetics and … kispi flughafen circleWebDec 19, 2024 · Package Dimensions 21.6 x 21 x 14.6 inches : Manufacturer Part Number Q0105-USH5-A-1 : Additional Information. ASIN : B0BQJ9MC7X : Customer Reviews: 4.3 out of 5 stars 194 ratings. 4.3 out of 5 stars : Best Sellers Rank #283,148 in Automotive (See Top 100 in Automotive) #212 in RV & Trailer Covers: lysine and sleepWebMay 2, 2024 · caper / growTree: Tree simulation with traits. growTree: Tree simulation with traits. In caper: Comparative Analyses of Phylogenetics and Evolution in R Description Usage Arguments Details Value Author (s) Examples Description This function provides a very general environment in which to simulate trees. kisp instructureWebusing functions from the ape and nlme packages. There are several other ways to conduct PGLS analyses in R, most notably using the pgls function in the caper package. We choose to present an analysis using nlme as this is mature, general purpose software with useful \helper" functions, and it ships with the base R distribution. lysine and testosterone